Comparison of core needle biopsy and fine-needle aspiration of enlarged peripheral lymph nodes for antemortem diagnosis of enzootic bovine lymphosarcoma in cattle

OBJECTIVE: To determine whether antemortem core needle biopsy and fine-needle aspiration of enlarged peripheral lymph nodes could be used to distinguish between inflammation and lymphosarcoma in cattle. DESIGN: Prospective study. ANIMALS: 25 cattle with enlarged peripheral lymph nodes. PROCEDURES: Antemortem biopsies of the selected lymph nodes were performed with an 18-gauge, 12-cm core needle biopsy instrument. Fine-needle aspirates were performed with a 20-gauge, 4-cm needle. Specimens were analyzed by pathologists who were unaware of clinical findings and final necropsy findings, and specimens were categorized as reactive, neoplastic, or nondiagnostic for comparison with necropsy results. RESULTS: Sensitivity and specificity of core needle biopsy ranged from 38% to 67% and from 80% to 25%, respectively. Sensitivity of fine-needle aspiration ranged from 41% to 53%, and specificity was 100%. Predictive values for positive test results ranged from 77% to 89% for core needle biopsy and were 100% for fine-needle aspiration. Predictive values for negative test results were low for both core needle biopsy and fine-needle aspiration. CONCLUSIONS AND CLINICAL RELEVANCE: Results indicated that core needle biopsy and fine-needle aspiration can aid in the antemortem diagnosis of bovine enzootic lymphosarcoma. Results of fine-needle aspiration of enlarged peripheral lymph nodes were more specific and more predictive for a positive test result than were results of core needle biopsy.     

The genomic sequence of the bovine T cell receptor gamma TRG loci and localization of the TRGC5 cassette

The bovine and ovine TRG genes have previously been shown to be located in two loci, TRG1 and TRG2, in contrast to human and mouse TRG genes that are located in a single locus. The bovine TRG1 and TRG2 loci are located on chromosome 4 at 4q3.1 and 4q1.5-2.2, respectively. The complete genomic organization of the two bovine loci is described: each locus comprises three cassettes, each one includes one or several variable genes (TRGV) and one or several joining genes (TRGJ) preceding a constant (TRGC) gene. The location of the TRGC5 cassette is conclusively described in 5' of the TRG1 locus. Analysis of 17 TRGV belonging to 10 different subgroups, 8 TRGJ and 6 TRGC genes is conducted which comprises the most comprehensive list to date.     

Towards a Pan‐European Assessment of Land Susceptibility to Wind Erosion

Understanding spatial and temporal patterns in land susceptibility to wind erosion is essential to design effective management strategies to control land degradation. The knowledge about the land surface susceptible to wind erosion in European contexts shows significant gaps. The lack of researches, particularly at the landscape to regional scales, prevents national and European institutions from taking actions aimed at an effective mitigating of land degradation. This study provides a preliminary pan‐European assessment that delineates the spatial patterns of land susceptibility to wind erosion and lays the groundwork for future modelling activities. An Index of Land Susceptibility to Wind Erosion (ILSWE) was created by combining spatiotemporal variations of the most influential wind erosion factors (i.e. climatic erosivity, soil erodibility, vegetation cover and landscape roughness). The sensitivity of each input factor was ranked according to fuzzy logic techniques. State‐of‐the‐art findings within the literature on soil erodibility and land susceptibility were used to evaluate the outcomes of the proposed modelling activity. Results show that the approach is suitable for integrating wind erosion information and environmental factors. Within the 34 European countries under investigation, moderate and high levels of land susceptibility to wind erosion were predicted, ranging from 25·8 to 13·0 M ha, respectively (corresponding to 5·3 and 2·9% of total area). New insights into the geography of wind erosion susceptibility in Europe were obtained and provide a solid basis for further investigations into the spatial variability and susceptibility of land to wind erosion across Europe. © 2014 The Authors. Land Degradation and Development published by John Wiley & Sons, Ltd.     

Ectomycorrhizal communities in a Mediterranean forest ecosystem dominated by <Emphasis Type="Italic">Quercus ilex</Emphasis>: seasonal dynamics and response to drought in the surface organic horizon

• Introduction   

Millions of hectares of Quercus ilex forests dominate disturbed landscapes in the western part of the Mediterranean basin. Although these forests are very widespread, little is known about the composition and structure of their associated ectomycorrhizal fungal communities.     

A method for linking in situ activities of hydrolytic enzymes to associated organisms in forest soils

A root window-based, enzyme-imprinted, membrane system has been modified to enable visualization of the activities of hydrolytic enzymes (acid phosphatase, aminopeptidase, chitinase, and β-glucosidase) in situ in forest soils. The approach can be used to correlate the distribution of enzyme activity with visible features such as roots, mycorrhizas, or mycelial mats. In addition, it enables accurate spatial soil sampling for analysis of microbial communities associated with enzyme activities. The substrates are colorimetric conjugates of napthol, where color develops instantly in the field, or fluorimetric conjugates of 4-methylumbelliferone, whose fluorescent products are detected by a gel-documenting system. The method will allow important questions about the relationship between taxonomic and functional diversity of soil microorganisms to be addressed and identification of enzyme activity hot-spots in soil.     

Alkalinity generation by Fe(III) reduction versus sulfate reduction in wetlands constructed for acid mine drainage treatment

Despite the widespread use of wetlands for acid mine drainage (AMD) treatment, alkalinity generating mechanisms in wetlands and their abiotic and biotic controls are poorly understood. While both dissimilatory sulfate reduction and Fe(III) reduction are alkalinity-generating mechanisms, only the former has been considered as important in wetlands constructed for AMD treatment. This study was conducted to determine the extent to which Fe(III) reduction occurs and the extent to which sulfate reduction versus Fe(III) reduction contributes to alkalinity generation in 5 wetlands constructed with different organic substrates (Sphagnum peat with limestone and fertilizer, Sphagnum peat, sawdust, straw/ manure, mushroom compost) that had been exposed to the same quality and quantity of AMD for 18–22 months. These substrates had Fe oxyhydroxide concentrations of 250–810 μmol Fe g^?1 dry substrate. Flasks containing 100 g of wet substrate along with either 150 mL of wetland water or 130 mL of wetland water and 20 mL of 37 % formalin were incubated at 4 °C in January and 25 °C in May. On days 0, 2, 4, 8, 12 and 16, the slurry mixtures were analyzed for concentrations of H⁺, Fe²⁺ and SO₄ ^2?. The bulk of the evidence indicates that for all except the mushroom compost wetland, especially at 25 °C, biologically-mediated Fe(II) reduction occurred and generated alkalinity. However, in none of the wetlands, regardless of incubation temperature, was there evidence to support net biological sulfate reduction or its attendant alkalinity generation. Sulfate reduction and concurrent Fe(III) oxyhydroxide accumulation may be important in the initial stages of wetland treatment of AMD, both contributing to effective Fe retention. However, as Fe(III) oxyhydroxides accumulate over time, Fe(III) reduction could lead not only to decreased Fe retention, but also to the potential net release of Fe from the wetland.     

Incorporating parameter uncertainty into prediction intervals for spatial data modeled via a parametric variogram

In spatial predictions, researchers usually treat the estimated theoretical variogram parameters as known without error and ignore the variability of the parameter estimators. Although the prediction is still unbiased, the prediction error is usually underestimated. Therefore, the coverage probability of the prediction interval usually is lower than the nominal probability. A simulation study is performed to show how the coverage probability for prediction relates to the true range and sill of an exponential variogram. This article proposes two parametric bootstrap methods to incorporate the variability of the corresponding parameter estimators. A simulation study is performed to evaluate the coverage probability of these proposed methods. Finally, we apply the parametric bootstrap methods to a real dataset and compare the results with those from naive (i.e., treating estimated parameters as known) and Bayesian methods.     

Host resistance to lung infection mediated by major vault protein in epithelial cells

The airway epithelium plays an essential role in innate immunity to lung pathogens. Ribonucleoprotein particles primarily composed of major vault protein (MVP) are highly expressed in cells that encounter xenobiotics. However, a clear biologic function for MVP is not established. We report here that MVP is rapidly recruited to lipid rafts when human lung epithelial cells are infected with Pseudomonas aeruginosa, and maximal recruitment is dependent on bacterial binding to the cystic fibrosis transmembrane conductance regulator. MVP was also essential for optimal epithelial cell internalization and clearance of P. aeruginosa. These results suggest that MVP makes a substantial contribution to epithelial cell-mediated resistance to infection.     

Preserved feedforward but impaired top-down processes in the vegetative state

Frontoparietal cortex is involved in the explicit processing (awareness) of stimuli. Frontoparietal activation has also been found in studies of subliminal stimulus processing. We hypothesized that an impairment of top-down processes, involved in recurrent neuronal message-passing and the generation of long-latency electrophysiological responses, might provide a more reliable correlate of consciousness in severely brain-damaged patients, than frontoparietal responses. We measured effective connectivity during a mismatch negativity paradigm and found that the only significant difference between patients in a vegetative state and controls was an impairment of backward connectivity from frontal to temporal cortices. This result emphasizes the importance of top-down projections in recurrent processing that involve high-order associative cortices for conscious perception.     

Plague bacteria target immune cells during infection

The plague is caused by the bacterium Yersinia pestis. Plague bacteria are thought to inject effector Yop proteins into host cells via the type III pathway. The identity of the host cells targeted for injection during plague infection is unknown. We found, using Yop beta-lactamase hybrids and fluorescent staining of live cells from plague-infected animals, that Y. pestis selected immune cells for injection. In vivo, dendritic cells, macrophages, and neutrophils were injected most frequently, whereas B and T lymphocytes were rarely selected. Thus, it appears that Y. pestis disables these cell populations to annihilate host immune responses during plague.